compute_kmers.hpp

Go to the documentation of this file.

// --------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
// --------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <robin_hood.h>
 
#include <raptor/argument_parsing/build_arguments.hpp>
#include <raptor/build/hibf/chopper_pack_record.hpp>
 
namespace raptor::hibf
{
 
void compute_kmers(robin_hood::unordered_flat_set<size_t> & kmers,
                   build_arguments const & arguments,
                   chopper_pack_record const & record);
 
} // namespace raptor::hibf