initialise_max_bin_kmers.hpp

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// --------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
// --------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <robin_hood.h>
 
#include <raptor/argument_parsing/build_arguments.hpp>
#include <raptor/build/hibf/build_data.hpp>
 
namespace raptor::hibf
{
 
template <seqan3::data_layout data_layout_mode>
size_t initialise_max_bin_kmers(robin_hood::unordered_flat_set<size_t> & kmers,
                                std::vector<int64_t> & ibf_positions,
                                std::vector<int64_t> & filename_indices,
                                lemon::ListDigraph::Node const & node,
                                build_data<data_layout_mode> & data,
                                build_arguments const & arguments);
 
} // namespace raptor::hibf